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@manual{PyMol,
	author = {PyMOL},
	date-added = {2022-06-27 21:01:32 +0700},
	date-modified = {2022-06-27 21:03:08 +0700},
	organization = { Schr{\"o}dinger, LLC},
	title = {The PyMOL Molecular Graphics System, Version 2}}

@article{van_Berkel_2006,
	author = {W.J.H. van Berkel and N.M. Kamerbeek and M.W. Fraaije},
	date-added = {2022-06-27 20:37:20 +0700},
	date-modified = {2022-06-27 20:38:06 +0700},
	doi = {10.1016/j.jbiotec.2006.03.044},
	journal = {Journal of Biotechnology},
	month = {aug},
	number = {4},
	pages = {670--689},
	publisher = {Elsevier {BV}},
	title = {Flavoprotein monooxygenases, a diverse class of oxidative biocatalysts},
	volume = {124},
	year = 2006,
	bdsk-url-1 = {https://doi.org/10.1016%2Fj.jbiotec.2006.03.044}}

@article{van2006flavoprotein,
	author = {Van Berkel, WJH and Kamerbeek, NM and Fraaije, MW16712999},
	date-added = {2022-06-27 20:36:22 +0700},
	date-modified = {2022-06-27 20:36:22 +0700},
	journal = {Journal of biotechnology},
	number = {4},
	pages = {670--689},
	publisher = {Elsevier},
	title = {Flavoprotein monooxygenases, a diverse class of oxidative biocatalysts},
	volume = {124},
	year = {2006}}

@article{trott2010autodock,
	author = {Trott, Oleg and Olson, Arthur J},
	date-added = {2022-06-27 20:35:32 +0700},
	date-modified = {2022-06-27 20:35:32 +0700},
	journal = {Journal of computational chemistry},
	number = {2},
	pages = {455--461},
	publisher = {Wiley Online Library},
	title = {AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading},
	volume = {31},
	year = {2010},
	bdsk-url-1 = {https://doi.org/10.1002/jcc.21334}}

@incollection{tinikul2020bacterial,
	author = {Tinikul, Ruchanok and Chunthaboon, Paweenapon and Phonbuppha, Jittima and Paladkong, Tanakan},
	booktitle = {The Enzymes},
	date-added = {2022-06-27 20:34:23 +0700},
	date-modified = {2022-06-27 20:41:18 +0700},
	pages = {427--455},
	publisher = {Elsevier},
	title = {Bacterial luciferase: Molecular mechanisms and applications},
	volume = {47},
	year = {2020},
	bdsk-url-1 = {https://doi.org/10.1016/bs.enz.2020.06.001}}

@article{saraiva2020interpretation,
	author = {Saraiva, Marco A},
	date-added = {2022-06-27 20:33:43 +0700},
	date-modified = {2022-06-27 20:33:43 +0700},
	journal = {Journal of Photochemistry and Photobiology B: Biology},
	pages = {112022},
	publisher = {Elsevier},
	title = {Interpretation of $\alpha$-synuclein UV absorption spectra in the peptide bond and the aromatic regions},
	volume = {212},
	year = {2020},
	bdsk-url-1 = {https://doi.org/10.1016/j.jphotobiol.2020.112022}}

@article{romero2018same,
	author = {Romero, Elvira and G{\'o}mez Castellanos, J Rub{\'e}n and Gadda, Giovanni and Fraaije, Marco W and Mattevi, Andrea},
	date-added = {2022-06-27 20:33:02 +0700},
	date-modified = {2022-06-27 20:33:02 +0700},
	journal = {Chemical reviews},
	number = {4},
	pages = {1742--1769},
	publisher = {ACS Publications},
	title = {Same substrate, many reactions: oxygen activation in flavoenzymes},
	volume = {118},
	year = {2018},
	bdsk-url-1 = {https://doi.org/10.1021/acs.chemrev.7b00650}}

@article{renz1999100,
	author = {Renz, Michael and Meunier, Bernard},
	date-added = {2022-06-27 20:32:16 +0700},
	date-modified = {2022-06-27 20:32:16 +0700},
	journal = {European journal of organic chemistry},
	number = {4},
	pages = {737--750},
	publisher = {Wiley Online Library},
	title = {100 years of Baeyer--Villiger oxidations},
	volume = {1999},
	year = {1999},
	bdsk-url-1 = {https://doi.org/10.1002/(SICI)1099-0690(199904)1999:4%3C737::AID-EJOC737%3E3.0.CO;2-B}}

@article{poklar2000thermal,
	author = {Poklar, Natasa and Vesnaver, Gorazd},
	date-added = {2022-06-27 20:28:44 +0700},
	date-modified = {2022-06-27 20:28:44 +0700},
	journal = {Journal of Chemical Education},
	number = {3},
	pages = {380},
	publisher = {ACS Publications},
	title = {Thermal denaturation of proteins studied by UV spectroscopy},
	volume = {77},
	year = {2000},
	bdsk-url-1 = {https://doi.org/10.1021/ed077p380}}

@incollection{pimviriyakul2020overview,
	author = {Pimviriyakul, Panu and Chaiyen, Pimchai},
	booktitle = {The Enzymes},
	date-added = {2022-06-27 20:28:06 +0700},
	date-modified = {2022-06-27 20:28:06 +0700},
	pages = {1--36},
	publisher = {Elsevier},
	title = {Overview of flavin-dependent enzymes},
	volume = {47},
	year = {2020},
	bdsk-url-1 = {https://doi.org/10.1016/bs.enz.2020.06.006}}

@article{morris2009autodock4,
	author = {Morris, Garrett M and Huey, Ruth and Lindstrom, William and Sanner, Michel F and Belew, Richard K and Goodsell, David S and Olson, Arthur J},
	date-added = {2022-06-27 20:27:20 +0700},
	date-modified = {2022-06-27 20:27:20 +0700},
	journal = {Journal of computational chemistry},
	number = {16},
	pages = {2785--2791},
	publisher = {Wiley Online Library},
	title = {AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility},
	volume = {30},
	year = {2009},
	bdsk-url-1 = {https://doi.org/10.1002/jcc.21256}}

@article{mirdita2022colabfold,
	author = {Mirdita, Milot and Sch{\"u}tze, Konstantin and Moriwaki, Yoshitaka and Heo, Lim and Ovchinnikov, Sergey and Steinegger, Martin},
	date-added = {2022-06-27 20:26:26 +0700},
	date-modified = {2022-06-27 20:26:26 +0700},
	journal = {Nature Methods},
	pages = {1--4},
	publisher = {Nature Publishing Group},
	title = {ColabFold: making protein folding accessible to all},
	year = {2022},
	bdsk-url-1 = {https://doi.org/10.1038/s41592-022-01488-1}}

@article{massey1994activation,
	author = {Massey, Vincent},
	date-added = {2022-06-27 20:25:27 +0700},
	date-modified = {2022-06-27 20:25:27 +0700},
	journal = {Journal of Biological Chemistry},
	number = {36},
	pages = {22459--22462},
	publisher = {Elsevier},
	title = {Activation of molecular oxygen by flavins and flavoproteins.},
	volume = {269},
	year = {1994},
	bdsk-url-1 = {https://doi.org/10.1016/S0021-9258(17)31664-2}}

@article{machuca2017method,
	author = {Machuca, Mayra A and Roujeinikova, Anna},
	date-added = {2022-06-27 20:24:15 +0700},
	date-modified = {2022-06-27 20:24:15 +0700},
	journal = {JoVE (Journal of Visualized Experiments)},
	number = {130},
	pages = {e57092},
	title = {Method for efficient refolding and purification of chemoreceptor ligand binding domain},
	year = {2017},
	bdsk-url-1 = {https://doi.org/10.3791/57092}}

@article{leon2019unveiling,
	author = {Le{\'o}n, I and Alonso, ER and Cabezas, C and Mata, S and Alonso, JL},
	date-added = {2022-06-27 20:23:20 +0700},
	date-modified = {2022-06-27 20:23:20 +0700},
	journal = {Communications Chemistry},
	number = {1},
	pages = {1--8},
	publisher = {Nature Publishing Group},
	title = {Unveiling the n→ $\pi$* interactions in dipeptides},
	volume = {2},
	year = {2019},
	bdsk-url-1 = {https://doi.org/10.1038/s42004-018-0103-2}}

@article{laemmli1970cleavage,
	author = {Laemmli, Ulrich Karl},
	date-added = {2022-06-27 20:22:15 +0700},
	date-modified = {2022-06-27 20:22:15 +0700},
	journal = {nature},
	number = {5259},
	pages = {680--685},
	publisher = {Nature Publishing Group},
	title = {Cleavage of structural proteins during the assembly of the head of bacteriophage T4},
	volume = {227},
	year = {1970},
	bdsk-url-1 = {doi:10.1038/227680a0}}

@article{krow2004b,
	author = {Krow, Grant R},
	date-added = {2022-06-27 20:21:28 +0700},
	date-modified = {2022-06-27 20:21:28 +0700},
	journal = {Organic reactions},
	pages = {251--798},
	publisher = {Wiley Online Library},
	title = {The B aeyer--V illiger Oxidation of Ketones and Aldehydes},
	volume = {43},
	year = {2004},
	bdsk-url-1 = {https://doi.org/10.1002/0471264180.or043.03}}

@article{jumper2021highly,
	author = {Jumper, John and Evans, Richard and Pritzel, Alexander and Green, Tim and Figurnov, Michael and Ronneberger, Olaf and Tunyasuvunakool, Kathryn and Bates, Russ and {\v{Z}}{\'\i}dek, Augustin and Potapenko, Anna and others},
	date-added = {2022-06-27 20:20:33 +0700},
	date-modified = {2022-06-27 20:20:33 +0700},
	journal = {Nature},
	number = {7873},
	pages = {583--589},
	publisher = {Nature Publishing Group},
	title = {Highly accurate protein structure prediction with AlphaFold},
	volume = {596},
	year = {2021},
	bdsk-url-1 = {https://doi.org/10.1038/s41586-021-03819-2}}

@article{joosten2007flavoenzymes,
	author = {Joosten, Vivi and van Berkel, Willem JH},
	date-added = {2022-06-27 20:19:42 +0700},
	date-modified = {2022-06-27 20:19:42 +0700},
	journal = {Current opinion in chemical biology},
	number = {2},
	pages = {195--202},
	publisher = {Elsevier},
	title = {Flavoenzymes},
	volume = {11},
	year = {2007},
	bdsk-url-1 = {https://doi.org/10.1016/j.cbpa.2007.01.010}}

@article{hefti2003deflavination,
	author = {Hefti, Marco H and Vervoort, Jacques and Van Berkel, Willem JH},
	date-added = {2022-06-27 20:18:13 +0700},
	date-modified = {2022-06-27 20:18:13 +0700},
	journal = {European journal of biochemistry},
	number = {21},
	pages = {4227--4242},
	publisher = {Wiley Online Library},
	title = {Deflavination and reconstitution of flavoproteins: tackling fold and function},
	volume = {270},
	year = {2003},
	bdsk-url-1 = {https://doi.org/10.1046/j.1432-1033.2003.03802.x}}

@article{ghisla1989mechanisms,
	author = {Ghisla, Sandro and Massey, Vincent},
	date-added = {2022-06-27 20:16:53 +0700},
	date-modified = {2022-06-27 20:16:53 +0700},
	journal = {EJB Reviews 1989},
	pages = {29--45},
	publisher = {Springer},
	title = {Mechanisms of flavoprotein-catalyzed reactions},
	year = {1989},
	bdsk-url-1 = {https://doi.org/10.1007/978-3-642-75189-9_3}}

@article{eberhardt2021autodock,
	author = {Eberhardt, Jerome and Santos-Martins, Diogo and Tillack, Andreas F and Forli, Stefano},
	date-added = {2022-06-27 20:15:18 +0700},
	date-modified = {2022-06-27 20:15:18 +0700},
	journal = {Journal of Chemical Information and Modeling},
	number = {8},
	pages = {3891--3898},
	publisher = {ACS Publications},
	title = {AutoDock Vina 1.2. 0: New docking methods, expanded force field, and python bindings},
	volume = {61},
	year = {2021},
	bdsk-url-1 = {https://doi.org/10.1021/acs.jcim.1c00203}}

@article{chaiyen2012enigmatic,
	author = {Chaiyen, Pimchai and Fraaije, Marco W and Mattevi, Andrea},
	date-added = {2022-06-27 20:12:36 +0700},
	date-modified = {2022-06-27 20:12:36 +0700},
	journal = {Trends in biochemical sciences},
	number = {9},
	pages = {373--380},
	publisher = {Elsevier},
	title = {The enigmatic reaction of flavins with oxygen},
	volume = {37},
	year = {2012},
	bdsk-url-1 = {https://doi.org/10.1016/j.tibs.2012.06.005}}

@article{bartlett2010n,
	author = {Bartlett, Gail J and Choudhary, Amit and Raines, Ronald T and Woolfson, Derek N},
	date-added = {2022-06-27 20:11:35 +0700},
	date-modified = {2022-06-27 20:11:35 +0700},
	journal = {Nature chemical biology},
	number = {8},
	pages = {615--620},
	publisher = {Nature Publishing Group},
	title = {n→ $\pi$* interactions in proteins},
	volume = {6},
	year = {2010},
	bdsk-url-1 = {https://doi.org/10.3389/fmolb.2020.598912}}

@article{aufhammer2005crystal,
	author = {Aufhammer, Stephan W and Warkentin, Eberhard and Ermler, Ulrich and Hagemeier, Christoph H and Thauer, Rudolf K and Shima, Seigo},
	date-added = {2022-06-27 20:09:47 +0700},
	date-modified = {2022-06-27 20:09:47 +0700},
	journal = {Protein science},
	number = {7},
	pages = {1840--1849},
	publisher = {Wiley Online Library},
	title = {Crystal structure of methylenetetrahydromethanopterin reductase (Mer) in complex with coenzyme F420: Architecture of the F420/FMN binding site of enzymes within the nonprolyl cis-peptide containing bacterial luciferase family},
	volume = {14},
	year = {2005},
	bdsk-url-1 = {https://doi.org/10.1110/ps.041289805}}