The effects of population size on genetic parameters and mating system of sandalwood in Gunung Sewu, Indonesia

https://doi.org/10.22146/ijbiotech.24347

Yeni Widyana Nurchahyani(1*), Sapto Indrioko(2), Eny Faridah(3), Atus Syahbudin(4)

(1) Laboratory of Forest Seed Science and Technology, Faculty of Forestry, Universitas Gadjah Mada, Bulaksumur Yogyakarta, Indonesia
(2) Laboratory of Forest Tree Improvement, Faculty of Forestry, Universitas Gadjah Mada, Bulaksumur Yogyakarta, Indonesia
(3) Laboratory of Plant Physiology, Faculty of Forestry, Universitas Gadjah Mada, Bulaksumur Yogyakarta, Indonesia
(4) Laboratory of Dendrology and Ethnobotany, Faculty of Forestry, Universitas Gadjah Mada, Bulaksumur Yogyakarta, Indonesia
(*) Corresponding Author

Abstract


We combined feld observations with isoenzyme analysis to compare population demographic and its effects on genetic diversity and mating systems, among six populations of sandalwood in Gunung Sewu, Indonesia, during March to August 2015. This endangered economic-important species was originated from the southeastern parts of Indonesia, but is recently occured as new landraces in Gunung Sewu, Java island. The observed heterozygosity varied from Ho 0.184 to 0.385 in parents, and from Ho 0.083 to 0.348 in offspring levels, based on the degree of clonality and genetic base. Most of genetic variation is distributed within populations, and only 2.7% were presented among populations, that was indicated by the low DST and FST value (HT 0.30; HS 0.276; DST 2.4%; FST 7.98%). A dendrogram indicated a grouping of populations into three clusters. However, there were seemed to be no association between geographical and genetic distance. Genetic depletion occured due to (i) clonality events as result of heavy-exploitation and/or natural disturbance which induced root suckering, (ii) genetic drifts and bottleneck effects, (iii) the founder effects due to parental low diversity, and (iv) the alteration on mating systems to be more inbreeders. Some of the results confrmed a “reproductive assurance prediction” while some others were contradicting this. It seemed that genetic diversity and mating systems are not much affected by population size, but more by the parental heterozygosity and the degree of clonality. Our results emphasized the importance of populations’ genetic base or parental genetic diversity to naturally maintain the genetic and evolutionary processes under equilibrium conditions.

Keywords


Gunung Sewu; genetic parameters; mating systems; population demographic; sandalwood

Full Text:

PDF


References

Angadi, V.G, Jain, S.H and Shankaranarayana K.H. 2003. Genetic diversity between sandal populations of different provenances in India. Institute of Wood Science and Technology. Bangalore, India.


Anonymous. 2012. Menanam kembali satu juta pohon cendana di NTT (The replanting of one million sandalwoods in Nusa Tenggara Timur). Ministry of Forestry, Republic of Indonesia. Jakarta, Indonesia.


Applegate, G.B, Davis, A.G.W and Annable, P.A. 1990. Managing sandalwood for conservation in North Queensland, Australia. USDA Forest Service. Gen. Tech. Rep. PSW-122.


Arroyo, M.T.K, Muñoz, M.S, Henríquez, C., Till-Bottraud, I. and Pérez, F. 2006. Erratic pollination, high selfng levels and their correlates and consequences in an altitudinally widespread above-tree-line species in the high Andes of Chile. Acta Oecologica 30: 248–257.


Barrett, S.C.H, Baker, A.M and Jesson, L.K. 2006. Mating strategies in Monocotyledons. Monocots Newsletter II. Depertment of Botany, University of Toronto. Ontario, Canada.


Bottin, L., Tassin, J., Nasi, R. and Bouvet, J.2007. Molecular, quantitative and abiotic variables for the delineation of evolutionary significant units: case of sandalwood (Santalum austrocaledonicum Vieillard) in New Caledonia. Conserv Genet. 8: 99–109.


Brand, J.E. 1994. Genotypic variation in Santalum album. Sandalwood Research Newsletter. Issue 2-1994.


Byrne, M., MacDonald, B., Broadhurst, L. and Brand, J. 2003. Regional genetic differentiation in Western Australian sandalwood (Santalum spicatum) as revealed by nuclear RFLP analysis. Theor Appl Genet 107: 1208–1214, 2003.


Craft, K.J. and Ashley, M.V. 2007. Landscape genetic structure of bur oak (Quercus macrocarpa) savannas in Illinois. Forest Ecology and Management 239: 13-20.


Dani, K.G.S., Ravikumar, P., Kumar, R.P and Kush, A. 2011. Genetic variation within and among small isolated populations of Santalum album. Biologia Plantarum 55(2): 323-326.


Dudash, M.R. and Fenster, C.B. 2001. The role of breeding system and inbreeding depression in the maintenance of an outcrossing mating strategy in Silene virginica (Caryophyllaceae). American Journal of Botany 88(11): 1953-1959.


Frankham, R., Ballou, J.D. and Briscoe, D.A. 2002. Introduction to Forest Genetics. Cambridge University Press. Cambridge, UK.


Harbaugh, D.T. and Baldwin, B.G. 2007. Phylogeny and biogeography of the Sandalwoods (Santalum, Santalaceae): repeated dispersals throughout the Pacifc. American Journal of Botany 94(6): 1028–1040.


Haryono, E. and Suratman. 2010. Signifcant features of Gunung Sewu Karst as geopark site. Proceeding on 4th International UNESCO Conference on Geopark. April 12- 15, 2010. Langkawi, Malaysia.


Herawan, T., Na’iem, M., Indrioko, S. and Indrianto, A. 2014. Somatic embryogenesis of Sandalwood (Santalum album L.). Indonesian Journal of Biotechnology, December, 2014. Vol. 19, No. 2, pp.168-
175.


Herlihy, C.R. and Eckert, C.G. 2005. Evolution of self-fertilization at geographical range margins? A comparison of demographic, floral, and mating system variables in central vs. peripheral populations of
Aquilegia canadensis (Ranunculaceae). American Journal of Botany 92(4): 744–751.


Indrioko, S. and Ratnaningrum, Y.W.N. 2015. Habitat loss caused clonality, genetic diversity reduction and reproductive failure in Santalum album (Santalaceae), an endangered endemic species of Indonesia.
Procedia Environmental Sciences V: 613-620


IUCN. 2009. IUCN Red List Categories And Criteria: Version 3.1. IUCN Species Survival Commission. International Union for Conservation of Nature and Natural Resources. Glad, Switzerland, and Cambridge, UK.


Kelleher, C.T, Hodkinson, T.R, Douglas, G.C. and Kelly, D.L. 2005. Species distinction in Irish populations of Quercus petraea and Q. robur: morphological vs. molecular analysis. Annals of Botany 96: 1237-1246.


Kettle, C.J, Hollingsworth, P.M, Jaffre, T., Moran, B. and Ennos, R.A. 2007. Identifying the early genetic consequences of habitat degradation in a highly threatened tropical conifer, Araucaria nemorosa Laubenfels. Molecular Ecology 16: 3581-3591.


Kwon, J.A. and Morden, C.W. 2002. Population genetic structure of two rare tree species (Colubrina oppositifolia and Alphitonia ponderosa, Rhamnaceae) from Hawaiian dry and mesic forests using
RAPDs. Molecular Ecology 11: 991-1001.


Lhuillier, E., Butaud, J.F. and Bouvet, J.M. 2006. Extensive clonality and strong differentiation in the Insular Pacific tree Santalum insulare: implications for its conservation. Annals of Botany 98: 1061–1072.

Nei, M. 1987. Molecular evolutionary genetics. Columbia University, New York, USA. Pautasso, M. 2009. Geographical genetics and the conservation of forest trees. Perspectives in Plant Ecology, Evolution and
Systematics 11: 157-189.


Rao, M.N., Ganeshaiah, K.N. and Shaanker, R.U. 2007. Assessing threats and mapping sandal resources to identify genetic ‘hotspot’ for in-situ conservation in peninsular India. Conserv Genet 8: 925–935.


Ratnaningrum, Y.W.N. and Indrioko, S. 2014. Variation on genotypes and flowering characters affecting pollination mechanisms of sandalwood (Santalum album Linn., Santalaceae) planted on ex-situ gene conservation in Yogyakarta, Indonesia. Eurasean J For Res VI: 167-179.


Ratnaningrum, Y.W.N. and Indrioko, S. 2015. Response of flowering and seed production of sandalwood (Santalum album linn., Santalaceae) to climate changes. Procedia Environmental Sciences V: 665-675.


Rimbawanto, A., Widyatmoko, A.Y.P.B.C. and Sulistyowati, P. 2006. Distribusi keragaman genetik populasi Cendana (Santalum album Linn.) berdasarkan penanda RAPD. Jurnal Penelitian Hutan
Tanaman 3(3).


Schmidt, T., Arens, P., Smulders, M.J.M, Billeter, R., Liira, J., Augenstein, I. and Durka, W. 2009. Effects of landscape structures on genetic diversity of Geum urbanum L. populations in agricultural
landscapes. Flora 204: 549-559.


Seido, K. 1993. Manual of isozyme analysis. Japan International Cooperation Agency (JICA). Yokohama, Japan.


Simanjuntak, T. 2002. Gunung Sewu in prehistoric times. Gadjah Mada University Press. Yogyakarta, Indonesia. Sindhu-Veerendra, H.C.S. and AnanthaPadmanabha, H.S.A. 1996. The breeding
system in Sandal (Santalum album L.). Silvae Genetica 45(4): 188-190.


Suma, T.B and Balasundaran, M. 2003. Isozyme variation in fve provenances of Santalum album in India. Aust Jour of Botany 51(3): 243 – 249.


Tamla, H.T, Cornelius, J.P and Page, T. 2012. Reproductive biology of three commercially valuable Santalum species: development of flowers and inflorescences, breeding systems, and interspecific crossability. Euphytica 184:323–333.


Torres, E., Iriondo, J.M and Perez, C. 2003. Genetic structure of an endangered plant, Antirrhinum microphyllum (Scrophulariaceae): allozyme and RAPD analysis. American Journal of Botany 90(1):
85–92.


Warburton, C.L, James, E.A, Fripp, Y.J, Trueman, S.J and Wallace, H.M. 2000. Clonality and sexual reproductive failure in remnant populations of Santalum lanceolatum (Santalaceae). Biological conservation Volume 96 Issue 1, November 2000.


Zhang, Z.Y, Chen, Y.Y and Li, D.Z. 2005. Detection of low genetic variation in a critically endangered Chinese pine, Pinus squamata, using RAPD and ISSR markers. Biochemical Genetics 43: 239-249.



DOI: https://doi.org/10.22146/ijbiotech.24347

Article Metrics

Abstract views : 2595 | views : 2316

Refbacks

  • There are currently no refbacks.


Copyright (c) 2017 Indonesian Journal of Biotechnology

Creative Commons License
This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.