* Corresponding Author
Molecular Identification and Phylogenetic Tree Reconstruction of Marine Fish Species from the Fishing Port of Kutaradja, Banda Aceh
https://doi.org/10.22146/jtbb.71955 Sapto Andriyono(1*), Adrian Damora(2), Hyun-Woo Kim(3)
(1) Depatment of Marine, Faculty of Fisheries and Marine, Universitas Airlangga
(2) Faculty of Marine and Fisheries, Universitas Syiah Kuala, Banda Aceh
(3) Departmen of Marine Biology, School of Fisheries Science, Pukyong National University, Busan, Korea
(*) Corresponding Author
Abstract
The enormous potential of marine resources possessed by Banda Aceh Province is expected to be utilised optimally. Accuracy in marine fish resource identification is a critical requirement to support their utilisation and preservation in Banda Aceh Province. In this study, a molecular identification approach was carried out in addition to conducting a morphological identification, commonly used by several scientists. The results were 47 COI sequences generated representing 33 genera, 19 families, and five orders. From the resulting COI partial sequences, there is one potential haplotype from the Scombridae family (Auxis thazard), two potential haplotypes from the Carangidae family (Elagatis bipinnulata and Decapterus macarellus), and two potential haplotypes from the Serranidae family (Variola albimarginata and Cephalopholis sonnerati). This study is essential for fisheries biological studies and other fisheries studies to support the sustainable utilisation of marine fisheries potential in Banda Aceh.
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Afriyie, G. et al., 2019. DNA barcoding of Ghanaian fish species: Status and prospects. African Journal of Biotechnology, 18, pp.659-663. doi: 10.5897/AJB2019.16792
Alcantara, S.G. & Yambot, A.V., 2016. DNA barcoding of commercially important grouper species (Perciformes, Serranidae) in the Philippines. Mitochondrial DNA Part A, 27, pp.3837-3845. doi: 10.3109/19401736.2014.958672
Baldwin, C.C. et al., 2009. Genetic identification and color descriptions of early life-history stages of Belizean Phaeoptyx and Astrapogon (Teleostei: Apogonidae) with comments on identification of adult Phaeoptyx. Zootaxa, 2008, pp.1-22. doi: 10.11646/zootaxa.2008.1.1
Basheer, V. et al., 2017. Mitochondrial signatures for identification of grouper species from Indian waters. Mitochondrial DNA Part A, 28, pp.451-457. doi: 10.3109/19401736.2015.1137899
Batubara, A.S. et al., 2017. Check list of marine fishes from Simeulue Island waters, Aceh Province, Indonesia. Aceh Journal of Animal Science, 2, pp.77-84. doi: 10.13170/ajas.2.2.9584.
Bingpeng, X. et al., 2018. DNA barcoding for identification of fish species in the Taiwan Strait. PloS one, 13, e0198109. doi: 10.1371/journal.pone.0198109
Carpenter, K.E. & Niem, V.H., 2001. FAO species identification guide for fishery purposes. The living marine resources of the Western Central Pacific. Volume 6. Bony fishes part 4 (Labridae to Latimeriidae), estuarine crocodiles, sea turtles, sea snakes and marine mammals. FAO Library.
Catanese, G. et al., 2008. Complete mitochondrial DNA sequences of the frigate tuna Auxis thazard and the bullet tuna Auxis rochei: Full Length Research Paper. DNA Sequence, 19, pp.159-166. doi: 10.1080/10425170701207117
Chang, C.H. et al., 2017. DNA barcodes of the native ray‐finned fishes in Taiwan. Molecular ecology resources, 17, pp.796-805. doi: 10.1111/1755-0998.12601
Damanik, M.R.S. et al., 2016. Kajian pendekatan ekosistem dalam pengelolaan perikanan di wilayah pengelolaan perikanan (WPP) 571 Selat Malaka Provinsi Sumatera Utara. Jurnal Geografi, 8, pp.165-176. doi:10.24114/jg.v8i2.5780
Damora, A. et al., 2020. Diversity of marine fish and their conservation status in Pusong Bay, Lhokseumawe City, Aceh Province, Indonesia. European Journal of Environmental Sciences, 10, pp.115-123. doi:10.14712/23361964.2020.13
Edrus, I.N. et al., 2016. Struktur komunitas ikan karang di perairan Pulau Raya, Pulau Rusa, Pulau Rondo dan taman laut Rinoi dan Rubiah, Nanggroe Aceh Darussalam. Jurnal Penelitian Perikanan Indonesia, 19, pp.175-186. Doi: 10.15578/jppi.19.4.2013.175-186
Edwarsyah, E. et al., 2019. The DNA Barcoding of Several Commercial Fish from Simeulue Islands Coast of Aceh Using Cytochrome Oxidase Sub Unit I (COI) Gene Marker. Budapest International Research in Exact Sciences (BirEx) Journal, 1, pp.62-70. doi:10.33258/birex.v1i1.140
Fadli, N. et al., 2019. The composition of coral reefs in Ulee Lheue breakwater, Banda Aceh, Aceh, Indonesia. IOP Conference Series: Earth and Environmental Science, 012077. doi:10.1088/1755-1315/348/1/012077
Handy, S.M. et al., 2011. A single-laboratory validated method for the generation of DNA barcodes for the identification of fish for regulatory compliance. Journal of AOAC International, 94, pp.201-210. doi: 10.1093/jaoac/94.1.201
Hariati, T., 2017. Status dan perkembangan perikanan pukat cincin di Banda Aceh. Jurnal Penelitian Perikanan Indonesia, 17, pp.157-167. doi: 10.15578/jppi.17.3.2011.157-167
Hariati, T. & Fauzi, M., 2017. Aspek reproduksi ikan banyar, Rastrelliger kanagurta (Cuv. 1817) di perairan utara Aceh [Reproductive aspect of indian mackerel Rastrelliger kanagurta (Cuv. 1817) of northern Aceh waters]. Jurnal Iktiologi Indonesia, 11, pp.47-53. doi:10.32491/jii.v11i1.155
Hariati, T. et al., 2015. Umur, Pertumbuhan Dan Laju Pemanfaatan Ikan Banyar (Rastrelliger kanagurta Cuvier, 1816), di Selat Malaka (Wilayah Pengelolaan Perikanan-571). Jurnal Penelitian Perikanan Indonesia, 21, pp.1-8. doi:10.15578/jppi.21.1.2015.1-8
Kamal, M.M. et al., 2019. Autentikasi spesies ikan kerapu berdasarkan marka gen MT-COI dari perairan Peukan Bada, Aceh. Jurnal Biologi Tropis, 19, pp.116-123. doi: 10.29303/jbt.v19i2.1245
Keskİn, E. & Atar, H.H., 2013. DNA barcoding commercially important fish species of Turkey. Molecular ecology resources, 13, pp.788-797. doi: 10.1111/1755-0998.12120
Krčmář, P. et al., 2019. Identification of tuna species Thunnus albacares and Katsuwonus pelamis in canned products by real-time PCR method. Acta Veterinaria Brno, 88, pp.323-328. doi:10.2754/avb201988030323
Kumar, S. at al., 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular biology and evolution, 33, pp.1870-1874. doi:10.1093/molbev/msw054
Kurnia, K. et al., 2016. Pemetaan daerah penangkapan ikan pelagis kecil di Perairan Utara Aceh. Jurnal Ilmiah Mahasiswa Kelautan Perikanan Unsyiah, 1.
Lakra, W. et al., 2011. DNA barcoding Indian marine fishes. Molecular Ecology Resources, 11, pp.60-71. 10.1111/j.1755-0998.2010.02894.x
Lubis, A.M. et al., 2016. The Contribution of the Lampulo Fishing Port, for Fishery Sector in Banda Aceh City, Nanggroe Aceh Darussalam Province. Jurnal Online Mahasiswa Fakultas Perikanan dan Ilmu Kelautan Universitas Riau, 3, pp.1-13.
Mardhatillah, I. et al., 2019. Application of Schaefer model on mackerels fishery in Aceh waters, Indonesia. IOP Conference Series: Earth and Environmental Science, 012114. doi: 10.1088/1755-1315/348/1/012114
Mullins, R.B. et al., 2018. Genomic analysis reveals multiple mismatches between biological and management units in yellowfin tuna (Thunnus albacares). ICES Journal of Marine Science, 75, pp.2145-2152. doi: 10.1093/icesjms/fsy102
Munawwarah, A. et al., 2016. Identifikasi Jenis-Jenis Ikan Yang Terdapat Di Tempat Pelelangan Ikan (TPI) Di Gampong Lampulo Kecamatan Kuta Alam Banda Aceh. Serambi Saintia: Jurnal Sains dan Aplikasi, 4. doi: 10.32672/jss.v4i1.115
Nasution, M.H. et al., 2019. Forecasting The Amount of Tuna/Madidihang (Yellowfin tuna) Landed in PPS Kutaraja Banda Aceh City With The Triple Exponential Smoothing Method. Samakia: Jurnal Ilmu Perikanan, 10, pp.08-14. doi: 10.35316/jsapi.v10i1.231
Neliyana, W.B. et al., 2014. Analisis Kelayakan Usaha Perikanan Pukat Cincin di Pelabuhan Perikanan Pantai (PPP) Lampulo Banda Aceh Propinsi Aceh. Jurnal Marine Fisheries, 5, pp.163-169.
Nur, F.M. et al., 2019. Checklist of coral fishes in Lhoknga and Lhok Mata Ie Beaches, Aceh Besar, Indonesia. IOP Conference Series: Earth and Environmental Science, 012104. doi: 10.1088/1755-1315/348/1/012104
Pecoraro, C. et al., 2017. Putting all the pieces together: integrating current knowledge of the biology, ecology, fisheries status, stock structure and management of yellowfin tuna (Thunnus albacares). Reviews in Fish Biology and Fisheries, 27, pp.811-841. doi: 10.1007/s11160-016-9460-z
Primyastanto, M. et al., 2021. Sustainable operational analysis of the cultivation of Indonesian Thunnus albacares by bioeconomic approach. Croatian Journal of Fisheries: Ribarstvo, 79, pp.61-70. doi: 10.2478cjf-2021-0007
Pringgenis, D. & Susilowati, R., 2016. Highly commercial fisheries tawar fish: molecular analysis DNA mitochondrial COI gene sequence and proximate analysis from malacca Strait, Riau. Jurnal Teknologi, 78. doi: 10.11113/jt.v78.8149
Rocha, L. & Bowen, B. 2008. Speciation in coral‐reef fishes. Journal of Fish Biology, 72, pp.1101-1121. doi: 10.1111/j.1095-8649.2007.01770.x
Salmarika, S. & Wisudo, S.H., 2019. Status Pengelolaan Sumber Daya Ikan Tongkol di Perairan Samudera Hindia Berbasis Pendaratan Pukat Cincin di Pelabuhan Perikanan Samudera Lampulo, Aceh: Suatu Pendekatan Ekosistem. Jurnal Penelitian Perikanan Indonesia, 24, pp.263-272.
Serdiati, N. et al., 2020. Morphological variations and phylogenetic analysis of Oryzias nigrimas Kottelat, 1990 (rice fish) from Lake Poso, Central Sulawesi, Indonesia. Biodiversitas Journal of Biological Diversity, 21. doi:10.13057/biodiv/d210305
Suman, A. et al., 2017. Potensi dan tingkat pemanfaatan sumber daya ikan di wilayah pengelolaan perikanan Negara Republik Indonesia (WPP NRI) Tahun 2015 serta Opsi Pengelolaannya. Jurnal Kebijakan Perikanan Indonesia, 8, pp.97-100. doi: 10.15578/jkpi.8.2.2016.97-100
Wang, X. et al., 2018. Relationship between water migration and quality changes of yellowfin tuna (Thunnus albacares) during storage at 0 C and 4 C by LF-NMR. Journal of aquatic food product technology, 27, pp.35-47. doi:10.1080/10498850.2017.1400630
Wang, Z-D. et al., 2012. DNA barcoding South China Sea fishes. Mitochondrial DNA, 23, pp.405-410. doi:10.3109/19401736.2012.710204
Ward, R.D. et al., 2005. DNA barcoding Australia's fish species. Philosophical Transactions of the Royal Society B: Biological Sciences, 360, pp.1847-1857. doi: 10.1098/rstb.2005.1716
Wiryawan, B. et al., 2016. Analisis Kelayakan Usaha Perikanan Pukat Cincin Di Pelabuhan Perikanan Pantai (Ppp) Lampulo Banda Aceh Propinsi Aceh (Analysis Financial Fisheries of Purse Seine in Lampulo Fishing Port Banda Aceh Provinsi Aceh). Marine Fisheries: Journal of Marine Fisheries Technology and Management, 5, pp.163-169. doi: 10.29244/jmf.5.2.163-169
Xu, L. et al., 2019. A molecular approach to the identification of marine fish of the Dongsha Islands (South China Sea). Fisheries Research, 213, pp.105-112. doi: 10.1016/j.fishres.2019.01.011
Yeni, E. & Naufal, A., 2017. Identifikasi Aktivitas Pengembangan Fasilitas Pelabuhan Perikanan Pantai Lampulo Banda Aceh. Prosiding SEMDI-UNAYA (Seminar Nasional Multi Disiplin Ilmu UNAYA), pp.355-363.
Yusuf, Q., 2003. Empowerment of Panglima Laot in Aceh. International workshop on Marine Science and Resource, pp.11-13.
Zhang, J. & Hanner, R., 2012. Molecular approach to the identification of fish in the South China Sea. PLoS One, 7, e30621. doi: 10.1371/journal.pone.0030621
Zhuang, X. et al., 2013. A comprehensive description and evolutionary analysis of 22 grouper (Perciformes, Epinephelidae) mitochondrial genomes with emphasis on two novel genome organizations. PLoS One, 8, e73561. doi: 10.1371/journal.pone.0073561
Zulfahmi, I. et al., 2022. Commercial marine fish species from Weh Island, Indonesia: Checklist, distribution pattern and conservation status. Biodiversitas Journal of Biological Diversity, 23. doi: 10.13057/biodiv/d230432
Zulmaidah Z, Zain J, Hutauruk RM. 2015. Facilities Utilization in Lampulo Fisheries Port, District of Kuta Alam, Banda Aceh City, Province Nanggroe Aceh Darussalam. Jurnal Online Mahasiswa, 2, pp.1-13.
DOI: https://doi.org/10.22146/jtbb.71955
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