Simple Tool of Metabolomic Studies: TLC-Based Metabolite Profiling Peronema canescens Jack in Archipelago Indonesia

https://doi.org/10.22146/mot.95221

Nurfijrin Ramadhani(1), Endang Lukitaningsih(2*), Abdul Rohman(3), Arief Nurrochmad(4)

(1) *) Faculty of Pharmacy, Gadjah Mada University, Yogyakarta *) Department of Pharmacy, Faculty of Pharmacy, Bengkulu University, Bengkulu
(2) Faculty of Pharmacy, Gadjah Mada University, Yogyakarta
(3) *) Faculty of Pharmacy, Universitas Gadjah Mada, Yogyakarta *) Centre of Excellence Institute for Halal Industry and Systems (PUI-PT IHIS), Universitas Gadjah Mada, Yogyakarta 55281
(4) Faculty of Pharmacy, Universitas Gadjah Mada, Yogyakarta
(*) Corresponding Author

Abstract


Peronema canescens Jack is a species of tropical plant utilized for its empirical applications, such as an antipyretic, antimalarial, immune stimulant, cold medicine, and mouthwash for its antiseptic properties. The objective of this study was to identify differences in the metabolite composition of P. canescens Jack leaves at different geographical locations. The metabolite profile was examined by thin-layer chromatography densitometry. The samples were collected from 10 distinct locations at varying elevations, with each location being sourced from three separate plants. Fingerprint metabolomics employs chemometric techniques such as Principal Component Analysis (PCA) and Hierarchical Cluster Analysis (HCA). The PCA analysis resulted in PC1 value of 41% and PC2 value of 32.6%, and these findings indicate the importance of considering the geographical locations where leaves are collected, as they reveal regional differences in the metabolism of P. canescens Jack secondary metabolites. Hierarchical cluster analysis (HCA) classified P. canescens Jack into four distinct clusters based on the closeness of their metabolite profiles. TLC is useful for the quality control of P. canescens Jack leaves based on variation geographical and authentication.


Keywords


chemometrics; Peronema canescens Jack; PCA; TLC; metabolomics

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References

Braz, R., Wolf, L. G., Lopes, G. C., & De Mello, J. C. P. (2012). Quality control and TLC profi le data on selected plant species commonly found in the Brazilian market. Revista Brasileira de Farmacognosia Brazilian Journal of Pharmacognosy, 22(5), 1111–1118. https://doi.org/10.1590/S0102

Carvalho, F. V., Fonseca Santana, L., Diogenes A. da Silva, V., Costa, S. L., Zambotti-Villelae, L., Colepicolo, P., Ferraz, C. G., & Ribeiro, P. R. (2021). Combination of a multiplatform metabolite profiling approach and chemometrics as a powerful strategy to identify bioactive metabolites in Lepidium meyenii (Peruvian maca). Food Chemistry, 364. https://doi.org/10.1016/j.foodchem.2021.130453

Demasi, S., Caser, M., Lonati, M., Cioni, P. L., Pistelli, L., Najar, B., & Scariot, V. (2018). Latitude and altitude influence secondary metabolite production in peripheral alpine populations of the mediterranean species lavandula angustifolia mill. Frontiers in Plant Science, 9. https://doi.org/10.3389/fpls.2018.00983

Dillasamola, D., Aldi, Y., Wahyuni, F. S., Rita, R. S., Dachriyanus, Umar, S., & Rivai, H. (2021). Study of Sungkai (Peronema canescens, Jack) leaf extract activity as an immunostimulators with in vivo and in vitro methods. Pharmacognosy Journal, 13(6), 1397–1407. https://doi.org/10.5530/PJ.2021.13.177

Hawrył, A., Ziobro, A., Świeboda, R., Hawrył, M., & Waksmundzka-Hajnos, M. (2016). TLC Profiles of Selected Cirsium Species with Chemometrics in Construction of Their Fingerprints. Journal of Chromatographic Science, 54(7), 1096–1104. https://doi.org/10.1093/chromsci/bmw064

Kabtni, S., Sdouga, D., Bettaib Rebey, I., Save, M., Trifi-Farah, N., Fauconnier, M. L., & Marghali, S. (2020). Influence of climate variation on phenolic composition and antioxidant capacity of Medicago minima populations. Scientific Reports, 10(1). https://doi.org/10.1038/s41598-020-65160-4

Karimi, A., Krähmer, A., Herwig, N., Schulz, H., Hadian, J., & Meiners, T. (2020). Variation of Secondary Metabolite Profile of Zataria multiflora Boiss. Populations Linked to Geographic, Climatic, and Edaphic Factors. Frontiers in Plant Science, 11. https://doi.org/10.3389/fpls.2020.00969

Kartini, K., Andriani, Y. A., Priambodo, W., Jayani, N. I. E., & Hadiyat, M. A. (2021). Validating and developing TLC-based fingerprinting for Curcuma longa L. © 2021 Journal of Pharmacy & Pharmacognosy Research, 9(5), 704–715. http://jppres.com/jppresOriginalArticle

Kartini, K., Dewi, E. R., Achmad, F., Jayani, N., Hadiyat, M. A., & Avanti, C. (2020). Thin Layer Chromatography Fingerprinting and Clustering of Orthosiphon stamineus Benth. from Different Origins. Phcogj.Com Pharmacognosy Journal, 12(1), 1683–1691. https://doi.org/10.5530/pj.2020.12.257

Kartini, K., Sabatini, S. S., Haridsa, N. M., Jayani, N. I. E., Setiawan, F., & Hadiyat, M. A. (2023). TLC-fingerprinting and chemometrics for

identification of Curcuma xanthorrhiza from different geographical origins in Indonesia. Biodiversitas, 24(12), 6557–6566. https://doi.org/10.13057/biodiv/d241217

Kim, S. Y., & Ha, J. H. (2024). Rapid determination of the geographical origin of kimchi by Fourier transform near-infrared spectroscopy coupled with chemometric techniques. Scientific Reports, 14(1), 24581. https://doi.org/10.1038/s41598-024-74662-4

Klau, M. E., Rohaeti, E., Rafi, M., Artika, I. M., Ambarsari, L., & Nurcholis, W. (2023). Metabolite Profiling of Curcuma zanthorrhiza Varieties Grown in Different Regions Using UHPLC-Q-Orbitrap-HRMS and Chemometrics Analysis. Biointerface Research in Applied Chemistry, 13(1). https://doi.org/10.33263/BRIAC131.026

Kowalska, T., & Sajewicz, M. (2022). Thin-Layer Chromatography (TLC) in the Screening of Botanicals–Its Versatile Potential and Selected Applications. In Molecules (Vol. 27, Issue 19). MDPI. https://doi.org/10.3390/molecules27196607

Latief, M., Anggun, ;, Fisesa, T., Putri, ;, Sari, M., Indra, ;, & Tarigan, L. (2021). Jurnal Farmasi Sains dan Praktis AKTIVITAS ANTIINFLAMASI EKSTRAK ETANOL DAUN SUNGKAI (PERONEMA CANESCENS JACK) PADA MENCIT TERINDUKSI KARAGENAN ANTI-INFLAMMATORY ACTIVITY OF SUNGKAI LEAVES (PERONEMA CANESCENS JACK) ETHANOL EXTRACT IN CARRAGEENAN INDUCED MICE. In JFSP (Vol. 7, Issue 2). http://journal.ummgl.ac.id/index.php/pharmacy

Latief, M., Sari, P. M., Fatwa, L. T., Tarigan, I. L., & Rupasinghe, H. P. V. (2021). Antidiabetic Activity of Sungkai (Peronema canescens Jack) Leaves Ethanol Extract on the Male Mice Induced Alloxan Monohydrate. Pharmacology and Clinical Pharmacy Research, 6. https://doi.org/10.15416/pcpr.v4i3.31666

Liu, X., Ahlgren, S., Korthout, H. A. A. J., Salomé-Abarca, L. F., Bayona, L. M., Verpoorte, R., & Choi, Y. H. (2018). Broad range chemical profiling of natural deep eutectic solvent extracts using a high performance thin layer chromatography–based method. Journal of Chromatography A, 1532, 198–207. https://doi.org/10.1016/j.chroma.2017.12.009

Mayasari, D., Murti, Y. B., Pratiwi, S. U. T., Sudarsono, S., Hanna, G., & Hamann, M. T. (2022). TLC-Based Fingerprinting Analysis of the Geographical Variation of Melastoma malabathricum in Inland and Archipelago Regions: A Rapid and Easy-to-Use Tool for Field Metabolomics Studies. Journal of Natural Products, 85(1), 292–300. https://doi.org/10.1021/acs.jnatprod.1c00622

Muharni, muharni, Ferlinahayati, F., Yohandini, H., Riyanti, F., & Pakpahan, N. A. P. (2021). The THE ANTICHOLESTEROL ACTIVITY OF BETULINIC ACID AND STIGMASTEROL ISOLATED FROM THE LEAVES OF SUNGKAI (PARONEMA CANESCENS JACK). International Journal of Applied Pharmaceutics, 13(2), 198–203. https://doi.org/10.22159/ijap.2021v13i2.40372

Mutiah, R., Hadya, C. M., Burhan Ma’arif, Z. A., Bhagawan, W. S., Annisa, R., Indrawijaya, Y. Y. A., Huwaida, F. I., Ria Ramadhani, D. A., Susilowati, R., & Taufik, I. (2019). Metabolite fingerprintiing of eleutherine palmifolia (L.) merr. By hptlc-densitometry and its correlation with anticancer activities and in Vitro Toxicity. Indonesian Journal of Pharmacy, 30(3), 157–166. https://doi.org/10.14499/indonesianjpharm30iss3pp157

Nagana Gowda, G. A., & Raftery, D. (2023). Quantitative NMR Methods in Metabolomics. In Handbook of Experimental Pharmacology (Vol. 277, pp. 143–164). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/164_2022_612

Nurani, L. H., Rohman, A., Windarsih, A., Guntarti, A., Riswanto, F. D. O., Lukitaningsih, E., Fadzillah, N. A., & Rafi, M. (2021). Metabolite fingerprinting using1h-nmr spectroscopy and chemometrics for classification of three curcuma species from different origins. Molecules, 26(24). https://doi.org/10.3390/molecules26247626

Plumb, R. S., Gethings, L. A., Rainville, P. D., Isaac, G., Trengove, R., King, A. M., & Wilson, I. D. (2023). Advances in high throughput LC/MS based metabolomics: A review. In TrAC - Trends in Analytical Chemistry (Vol. 160). Elsevier B.V. https://doi.org/10.1016/j.trac.2023.116954

Pranatami, D. A., Atiqah, N., Mariska, R., &

Walisongo, S. J. (2023). The Differences in Adaptation Between Lowland and Highland Populations. 5.

Putranto, A. M. H. (2014). EXAMINATION OF THE SUNGKAI’S YOUNG LEAF EXTRACT (Peronema canescens) AS AN ANTIPIRETIC, IMMUNITY, ANTIPLASMODIUM AND TERATOGENITY IN MICE (Mus.muculus). International Journal of Science and Engineering, 7(1). https://doi.org/10.12777/ijse.7.1.30-34

Qaderi, M. M., Martel, A. B., & Strugnell, C. A. (2023). Environmental Factors Regulate Plant Secondary Metabolites. In Plants (Vol. 12, Issue 3). MDPI. https://doi.org/10.3390/plants12030447

Rafi, M., Yolanda, S. R., Septaningsih, D. A., Bintang, M., Aminah, N. S., Insanu, M., & Rohman, A. (2023). Identification of Sida rhombifolia from Its Related Plants Using Thin-Layer Chromatographic Analysis. Indonesian Journal of Chemistry, 23(1), 21–32. https://doi.org/10.22146/ijc.73077

Rohaeti, E., Karunina, F., & Rafi, M. (2021). Ftir-based fingerprinting and chemometrics for rapid investigation of antioxidant activity from syzygium polyanthum extracts. Indonesian Journal of Chemistry, 21(1), 128–136. https://doi.org/10.22146/ijc.54577

Sahoo, M. R., & Umashankara, M. S. (2022). FTIR Based Metabolomics Profiling and Fingerprinting of Some Medicinal Plants: An Attempt to Develop an Approach for Quality Control and Standardization of Herbal Materials. Pharmacognosy Research, 15(1), 163–167. https://doi.org/10.5530/097484900288

Salomé-Abarca, L. F., Van Den Hondel, C. A. M. J. J., Erol, Ö., Klinkhamer, P. G. L., Kim, H. K., & Choi, Y. H. (2021). HPTLC-based chemical profiling: An approach to monitor plant metabolic expansion caused by fungal endophytes. Metabolites, 11(3). https://doi.org/10.3390/metabo11030174

Tarigan, I. L., Sutrisno, Rumaida, Aini, I. P. S., & Latief, M. (2022). Isolation of a Flavone Apigenin and a Steroids Squalene from Peronema canescens Jack Leaves with Anti-Inflammatory Activities. Pharmacognosy Journal, 14(6), 744–752. https://doi.org/10.5530/pj.2022.14.162

Verma, N., & Shukla, S. (2015). Impact of various factors responsible for fluctuation in plant secondary metabolites. In Journal of Applied Research on Medicinal and Aromatic Plants (Vol. 2, Issue 4, pp. 105–113). Elsevier GmbH. https://doi.org/10.1016/j.jarmap.2015.09.002

WHO. (2000). General Guidelines for Methodologies on Research and Evaluation of Traditional Medicine.

Xiao, Q., Mu, X., Liu, J., Li, B., Liu, H., Zhang, B., & Xiao, P. (2022). Plant metabolomics: a new strategy and tool for quality evaluation of Chinese medicinal materials. In Chinese Medicine (United Kingdom) (Vol. 17, Issue 1). BioMed Central Ltd. https://doi.org/10.1186/s13020-022-00601-y

Yang, L., Wen, K. S., Ruan, X., Zhao, Y. X., Wei, F., & Wang, Q. (2018). Response of plant secondary metabolites to environmental factors. In Molecules (Vol. 23, Issue 4). MDPI AG. https://doi.org/10.3390/molecules23040762

Yang, W., Chen, X., Li, Y., Guo, S., Wang, Z., & Yu, X. (2020). Advances in Pharmacological Activities of Terpenoids. In Natural Product Communications (Vol. 15, Issue 3).

Yunita, O., Rantam, A., & Yuwono, M. (2019). Metabolic fingerprinting of Sauropus androgynus (L.) Merr. leaf extracts. https://doi.org/10.29090/psa.2019.01.017.0043

Zahiruddin, S., Parveen, A., Khan, W., Parveen, R., & Ahmad, S. (2021). TLC-Based Metabolite Profiling and Bioactivity-Based Scientific Validation for Use of Water Extracts in AYUSH Formulations. Evidence-Based Complementary and Alternative Medicine, 2021. https://doi.org/10.1155/2021/2847440

Zidorn, C. (2010). Altitudinal variation of phenolics contents in flowering heads of the Asteraceae family. https://www.researchgate.net/publication/216674608



DOI: https://doi.org/10.22146/mot.95221

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