Keragaman Genetik Ikan Uceng (Nemacheilus) di Sungai Wilayah Banyumas Berdasar Sekuen Gen Cytochrome Oxidase Subunit I (COI)
Rima Oktavia Kusuma(1*), Muhammad Sulaiman Dadiono(2), Baruna Kusuma(3), Hamdan Syakuri(4)
(1) Program Studi Akualkultur, Fakultas Perikanan dan Ilmu Kelautan, Universitas Jendral Soedirman, Purwokerto, Jawa Tengah, Indonesia
(2) Program Studi Akualkultur, Fakultas Perikanan dan Ilmu Kelautan, Universitas Jendral Soedirman, Purwokerto, Jawa Tengah, Indonesia
(3) Program Studi Akualkultur, Fakultas Perikanan dan Ilmu Kelautan, Universitas Jendral Soedirman, Purwokerto, Jawa Tengah, Indonesia
(4) Program Studi Akualkultur, Fakultas Perikanan dan Ilmu Kelautan, Universitas Jendral Soedirman, Purwokerto, Jawa Tengah, Indonesia
(*) Corresponding Author
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Akbar, N., N.P. Zamani & H. Madduppa. 2014. Keragaman genetik ikan tuna sirip kuning (Thunnus albacares) dari dua populasi di Laut Maluku, Indonesia. Depik. 31. 65-73.
Astuti, D. 2011. Variasi gen mitokondria cytocrome B pada dua jenis burung kakatua putih (Cacatua alba dan C. moluccensis). Jurnal Biologi Indonesia.
Barton, N.H. 2010. Mutation and The Evolution of Recombination. Phil. Trans. R. Soc. B 365, 1281-1294.
Batubara, A., R.R. Noor, A. Farajallah, B. Tiesnamurti & M. Doloksaribu. 2011. Karakterisasi molekuler enam subpopulasi kambing lokal Indonesia berdasarkan analisis sekuen daerah D-LOOP DNA mitokondria. Jurnal Ilmu Ternak dan Veteriner. 16 (1): 49-60.
Claverie, J.M and C. Noteredame. 2003. Bioinformatics for Dummies. Indianapolis (U.S.): Whey Publishing.
De-Joung., A. Maaike, N. Wahlberg, M. van Eijk, P.M. Brakefield & B.J. Zwaan. 2011. Mitochondrial DNA Signature for the range-wide population of Bicylus anynana suggests a rapid expansion from recent refugia. PLoS ONE. (6): e21385.
Dharmayanti, N.L.P & I. Indi. 2011. Filogenetika Molekuler: Metode Taksonomi Organisme Berdasarkan Sejarah Evolusi.
Folmer, O., B. Michael, B. Michael & B.B. Hoeh. 1994. DNA primer for the amplification of mitochondrial cytochrome C oxidase subunit I from diverse metazoan invertebrates. PubMed Molecular Marine Biology and Biotechnology. 3 (5): 294-9.
Gu, X & W.H. Li. 1994. A Model for the Correlation of Mutation Rate with G.C. Content and the Origin of G.C.- Rich Isochores, Journal of Molecular Evolution. Springer. New York
Hadiaty, H., R. Kurnia & K. Yamahira. 2014. The loaches of genus Nemacheilus (Telestoi: Nemacheilidae) in Sunda Island, with an identification key. Jurnal Ikhtiologi Indonesia, 14 (2): 83-100.
Hebert, N., D. Lumbatobing, A. Sholihah, H. Dahruddin, E. Delrieu-Trottin, F. Busson, S. Sauri, R. Hadiaty & P. Keith. 2019. Revisiting species boundaries and distribution ranges of Neimacheilus spp. (Cypriniformes: Cyprinidae) in Java, Bali, and Lombok through DNA barcodes: Implication for conservation in biodiversity hot spot. Conserv. Genet. 20 (3): 517- 529.
Hubert, P.D., N.S. Ratnasinghamand & J.R. deWaard. 2003. Barcoding animal life: Cytochrome C Oxidase Subunit I Divergenses Among Closely Related Species. Proc. R. Soc. Lond. B (Suppl) 270: S96-S99.
Hobbs, J.P.A., L. Herwerden, D.R. Jerry, G.P. Jones & P.L. Munday. 2013. High genetic diversity in geographically remote populations of endemic and widespread coral reef angelfishes (genus: Centropyge). Diversity 5: 39-50.
Ketchum, K., N. Remi, M.M. Dieng, G. O-Vaughan, J.A. Bur & Y. Idaghdour. 2016. Levels of genetic diversity and taxonomic status of Epinephelus species in United Arab Emirates fish markets. Marine Pollution Bulletin.
Kottelat Maurice.1993. Freshwater fishes of western Indonesia and Sulawesi. Periplus Editions
Mahardini, A.T. 2019. Penaruh Perbedaan Jenis Substrat Terhadap Kelulushidupan dan Pertumbuhan Ikan Uceng (Nemacheilus fasciatus). Skripsi. Universitas Brawijaya
Nei, M. 1987. Molecular Evolutionary Genetics. New York. Colombia University.Press. New York.512 pp.
Nielsen, R & Z. Yang. 1998. Likelihood Models for Detecting Positively Selected Amino Acid Sites and Applications to the Hiv-1 envelope gene. Genetics. 148 (3): 929- 936.
Noor, S., H. Pramono & S. Aziz. 2014. Deteksi keragaman spesies bakteri metanogen rumen sapi menggunakan kloning gen 16S rRNA dan sekuensing. Scripta Biologica. 1 (4): 1-8.
Nuryanto, A., M. Bhagawati, M.N. Abulias & I. Indarmawan. 2012. Fish diversity at Cileuleuh River in District of Majenang, Cilacap Regency, Central Java. Jurnal Iktiologi Indonesia 12 (2): 147-153.
Nuryanto, A., N. Komalawati & S. Sugiharto. 2019. Genetic diversity assessment of Hemibagrus nemurus from Rivers in Java Island, Indonesia using COI gene. Biodiversitas. 20 (9).
Rahim, Z & H. Madduppa. 2020. Identifikasi ikan sardin komersial (Dussumieria elopsoides) yang didaratkan di Pasar Muara Angke, Jakarta menggunakan pengamatan morfologi, morfometrik dan DNA barcoding. Jurnal Kelautan. 13 (2).
Riyandini, A.Y., M.S. Widodo & M. Fadjar. 2020. Cytochrome C oxidase subunit 1 gene (COI) for Identification and genetic variation of loaches (Nemacheilus fasciatus). Research Journal of Life Science. 7 (3): 142-154.
Tatangindatu, F., O. Kalesaran & R. Rompas. 2013. Studi parameter fisika kimia air pada areal budidaya ikan di Danau Tondano, Desa Paleloan, Kabupaten Minahasa. Jurnal Budidaya Perairan. 1 (2): 8-19.
Ukenye, E.A., I.A. Taiwo & P.E. Anyanwu. 2019. Morphological and genetic variation in tilapia guineensis in West African Coastal waters: A mini-review. Biotechnology Report. 24.
Wibowo, A & S. Kaban. 2015. Genetic variation of tor tambroides (Bleeker, 1854) along Batang Terusan River, West Sumatra: Implication for stock identification. Ind. Fish. Res. J. 21 (2).
DOI: https://doi.org/10.22146/jfs.61167
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